I just found this link again after forgetting about it for a couple of years. The material still applies though and seems worthy to put up here. Check out this recorded presentation I did in Korea on the best practices for FMS2.
http://www.solid-thinking.com/applications/evoSeminar/seminar.asp?s=bp2005
Here's another one on security with FMS. Bit dated now but some info is useful I think.
One of the cool things about the app we built to present these presentations is the captions. I'll have to do some kind of tutorial or something on how we went about that. Here's that other preso:
http://www.solid-thinking.com/applications/evoSeminar/seminar_se.asp?s=se2005